Systematic analysis of binding of transcription factors to noncoding variants | Nature
DNA binding site - Wikipedia
TFBSPred: A functional transcription factor binding site prediction webtool for humans and mice
JASPAR - Documentation
DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo: Cell Systems
Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks | BMC Genomics | Full Text
Leopard: fast decoding cell type-specific transcription factor binding landscape at single-nucleotide resolution | bioRxiv
Accurate and sensitive quantification of protein-DNA binding affinity | PNAS
Transcription factor binding site prediction at rs11200638 and... | Download Scientific Diagram
Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm | Journal of Chemical Information and Modeling
Physicochemical models of protein–DNA binding with standard and modified base pairs | PNAS
Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture: Molecular Therapy - Nucleic Acids
Enhancing the interpretability of transcription factor binding site prediction using attention mechanism | Scientific Reports
Frontiers | Prediction of DNA-Binding Protein–Drug-Binding Sites Using Residue Interaction Networks and Sequence Feature
Predicting Hot Spot Residues at Protein–DNA Binding Interfaces Based on Sequence Information | SpringerLink
PDF] DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo. | Semantic Scholar
Figure 5 | PLOS Computational Biology
Bioinformatics pipeline for the structural and functional annotation of transcription factors.
IJMS | Free Full-Text | DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence
Prediction of transcription factor binding sites and mutation analysis... | Download Scientific Diagram
PDF] A Review About Transcription Factor Binding Sites Prediction Based on Deep Learning | Semantic Scholar
Prediction of DNA binding motifs from 3D models of transcription factors; identifying TLX3 regulated genes" published in Nucleic Acids Research — The Tapinos Lab